Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action

LEESE, Florian** - BOUCHEZ, Agnès - ABARENKOV, Kessy - ALTERMATT, Florian - BORJA, Ángel - BRUCE, Kat - EKREM, Torbjørn - ČIAMPOR, Fedor, Jr - ČIAMPOROVÁ-ZAŤOVIČOVÁ, Zuzana - COSTA, Filipe O. - DUARTE, Sofia - ELBRECHT, Vasco - FONTANETO, Diego - FRANC, Alain - GEIGER, Matthias F. - HERING, Daniel - KAHLERT, Maria - KALAMUJIĆ STROIL, Belma - KELLY, Martyn G. - KESKIN, Emre - LISKA, Igor - MERGEN, Patricia - MEISSNER, Kristian - PAWLOWSKI, Jan - PENEV, Lyubomir - REYJOL, Yorick - ROTTER, Ana - STEINKE, Dirk - WAL, Bas van der - VITECEK, Simon - ZIMMERMANN, Jonas - WEIGAND, Alexander M. Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action. In Advances in Ecological Research, 2018, vol. 58, p. 63-99. ISSN 0065-2504. Available on: https://doi.org/10.1016/bs.aecr.2018.01.001Ohlasy:
:[1.1] DUMBRELL, Alex J. - WOODWARD, Guy - JACKSON, Michelle C. - BOHAN, David A. ADVANCES IN ECOLOGICAL RESEARCH PREFACE. In NEXT GENERATION BIOMONITORING, PT 2. ISSN 0065-2504, 2018, vol. 59, 2, p. XIII-XVI., Registrované v: WOS
:[1.1] HAJIBABAEI, Mehrdad - PORTER, Teresita M. - WRIGHT, Michael - RUDAR, Josip. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. In PLOS ONE. ISSN 1932-6203, SEP 12 2019, vol. 14, no. 9., Registrované v: WOS
:[1.1] FERNANDES, Kristen - VAN DER HEYDE, Mieke - COGHLAN, Megan - WARDELL-JOHNSON, Grant - BUNCE, Michael - HARRIS, Richard - NEVILL, Paul. Invertebrate DNA metabarcoding reveals changes in communities across mine site restoration chronosequences. In RESTORATION ECOLOGY. ISSN 1061-2971, SEP 2019, vol. 27, no. 5, p. 1177-1186., Registrované v: WOS
:[1.1] BAGLEY, Mark - PILGRIM, Erik - KNAPP, Martin - YODER, Chris - DOMINGO, Jorge Santo - BANERJI, Aabir. High-throughput environmental DNA analysis informs a biological assessment of an urban stream. In ECOLOGICAL INDICATORS. ISSN 1470-160X, SEP 2019, vol. 104, p. 378-389., Registrované v: WOS
:[1.1] BELLE, Christina C. - STOECKLE, Bernhard C. - GEIST, Juergen. Taxonomic and geographical representation of freshwater environmental DNA research in aquatic conservation. In AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS. ISSN 1052-7613, NOV 2019, vol. 29, no. 11, p. 1996-2009., Registrované v: WOS
:[1.1] KOWALSKA, Zuzanna - PNIEWSKI, Filip - LATALA, Adam. DNA barcoding - A new device in phycologist's toolbox. In ECOHYDROLOGY & HYDROBIOLOGY. ISSN 1642-3593, JUL 2019, vol. 19, no. 3, p. 417-427., Registrované v: WOS
:[1.1] BARSOUM, N. - BRUCE, C. - FORSTER, J. - JI, Y.Q. - YU, D.W. The devil is in the detail: Metabarcoding of arthropods provides a sensitive measure of biodiversity response to forest stand composition compared with surrogate measures of biodiversity. In ECOLOGICAL INDICATORS. ISSN 1470-160X, JUN 2019, vol. 101, p. 313-323., Registrované v: WOS
:[1.2] COMPSON, Zacchaeus G. - MONK, Wendy A. - HAYDEN, Brian - BUSH, Alex - O'MALLEY, Zoë - HAJIBABAEI, Mehrdad - PORTER, Teresita M. - WRIGHT, Michael T.G. - BAKER, Christopher J.O. - AL MANIR, Mohammad Sadnan - CURRY, R. Allen - BAIRD, Donald J. Network-Based Biomonitoring: Exploring Freshwater Food Webs With Stable Isotope Analysis and DNA Metabarcoding. In Frontiers in Ecology and Evolution, 2019, vol. 7, art. no. 395, Registrované v: SCOPUS
:[1.2] BUSH, Alex - COMPSON, Zacchaeus G. - MONK, Wendy A. - PORTER, Teresita M. - STEEVES, Royce - EMILSON, Erik - GAGNE, Nellie - HAJIBABAEI, Mehrdad - ROY, Mélanie - BAIRD, Donald J. Studying Ecosystems With DNA Metabarcoding: Lessons From Biomonitoring of Aquatic Macroinvertebrates. In Frontiers in Ecology and Evolution, 2019, vol. 7, art. no. 434, Registrované v: SCOPUS
:[3.1] FERNÁNDEZ, S., RODRÍGUEZ‐MARTÍNEZ, S., GARCIA‐VAZQUEZ, E. & ARDURA, A. How can eDNA contribute in riverine macroinvertebrate assessment? A metabarcoding approach in the Nalón River (Asturias, Northern Spain). In Environmental DNA, 2019, vol. 1, p. 385-401. ISSN 2637-4943.
:[1.1] LIU, M.X. - CLARKE, L.J. - BAKER, S.C. - JORDAN, G.J. - BURRIDGE, C.P. A practical guide to DNA metabarcoding for entomological ecologists. In ECOLOGICAL ENTOMOLOGY. ISSN 0307-6946, JUN 2020, vol. 45, no. 3, p. 373-385., Registrované v: WOS
:[1.1] BUSH, A. - MONK, W.A. - COMPSON, Z.G. - PETERS, D.L. - PORTER, T.M. - SHOKRALLA, S. - WRIGHT, M.T.G. - HAJIBABAEI, M. - BAIRD, D.J. DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness. In PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. ISSN 0027-8424, APR 14 2020, vol. 117, no. 15, p. 8539-8545., Registrované v: WOS
:[1.1] PICOT, A. - COBO-DIAZ, J.F. - PAWTOWSKI, A. - DONOT, C. - LEGRAND, F. - LE FLOCH, G. - DENIEL, F. Water Microbiota in Greenhouses With Soilless Cultures of Tomato by Metabarcoding and Culture-Dependent Approaches. In FRONTIERS IN MICROBIOLOGY. JUN 23 2020, vol. 11., Registrované v: WOS
:[1.1] GRAPCI-KOTORI, L. - VAVALIDIS, T. - ZOGARIS, D. - SANDA, R. - VUKIC, J. - GECI, D. - IBRAHIMI, H. - BILALLI, A. - ZOGARIS, S. Fish distribution patterns in the White Drin (Drini i Bardhe) river, Kosovo. In KNOWLEDGE AND MANAGEMENT OF AQUATIC ECOSYSTEMS. ISSN 1961-9502, JUL 9 2020, no. 421., Registrované v: WOS
:[1.1] SEPULVEDA, A.J. - NELSON, N.M. - JERDE, C.L. - LUIKART, G. Are Environmental DNA Methods Ready for Aquatic Invasive Species Management?. In TRENDS IN ECOLOGY & EVOLUTION. ISSN 0169-5347, AUG 2020, vol. 35, no. 8, p. 668-678., Registrované v: WOS
:[1.1] MIYA, M. - GOTOH, R.O. - SADO, T. MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples. In FISHERIES SCIENCE. ISSN 0919-9268, NOV 2020, vol. 86, no. 6, p. 939-970., Registrované v: WOS
:[1.1] JIANG, K.W. - ZHANG, R. - ZHANG, Z.F. - PAN, B. - TIAN, B. DNA barcoding and molecular phylogeny of Dumasia (Fabaceae: Phaseoleae) reveals a cryptic lineage. In PLANT DIVERSITY. ISSN 2096-2703, OCT 2020, vol. 42, no. 5, p. 376-385., Registrované v: WOS
:[1.1] ANTICH, A. - PALACIN, C. - CEBRIAN, E. - GOLO, R. - WANGENSTEEN, O.S. - TURON, X. Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?. In MOLECULAR ECOLOGY. ISSN 0962-1083, JUL 2021, vol. 30, no. 13, SI, p. 3175-3188., Registrované v: WOS
:[1.1] COMPSON, Z.G. - MCCLENAGHAN, B. - SINGER, G.A.C. - FAHNER, N.A. - HAJIBABAEI, M. Metabarcoding From Microbes to Mammals: Comprehensive Bioassessment on a Global Scale. In FRONTIERS IN ECOLOGY AND EVOLUTION. ISSN 2296-701X, NOV 30 2020, vol. 8., Registrované v: WOS
:[1.2] UCHIDA, Noriko - KUBOTA, Kengo - AITA, Shunsuke - KAZAMA, So. Time-series transition of the community structure of aquatic insects at middle domain of Natori river basin in Miyagi Prefecture as revealed by eDNA metabarcoding analysis. In Ecology and Civil Engineering. ISSN 13443755, 2020-09-28, 23, 1, pp. 21-36. Dostupné na: https://doi.org/10.3825/ECE.23.21., Registrované v: SCOPUS
:[1.2] WANG, Yurong - WEN, Jiating - ZHANG, Jianmin. Review on application of environmental DNA technology in river ecosystems. In Shuili Fadian Xuebao/Journal of Hydroelectric Engineering. ISSN 10031243, 2020-05-25, 39, 5, pp. 90-98. Dostupné na: https://doi.org/10.11660/slfdxb.20200509., Registrované v: SCOPUS
:[3.1] SCHUCH, S. - LUDWIG, H. - WESCHE, K. Erfassungsmethoden für ein Insektenmonitoring, Eine Materialsammlung. BfN-Skripten 565, Bundesamt für Naturschutz, Bonn - Bad Godesberg, 2020, 83 pp, ISBN 978-3-89624-326-3.
:[1.1] LIN, X.L. - MO, L.D. - BU, W.J. - WANG, X.H. The first comprehensive DNA barcode reference library of Chinese Tanytarsus (Diptera: Chironomidae) for environmental DNA metabarcoding. In DIVERSITY AND DISTRIBUTIONS. ISSN 1366-9516, OCT 2021, vol. 27, no. 10, SI, p. 1932-1941., Registrované v: WOS
:[1.1] MARTIN, Daniel - AGUADO, Maria Teresa - FERNANDEZ ALAMO, Maria-Ana - BRITAYEV, Temir Alanovich - BOGGEMANN, Markus - CAPA, Maria - FAULWETTER, Sarah - FUKUDA, Marcelo Veronesi - HELM, Conrad - PETTI, Monica Angelica Varella - RAVARA, Ascensao - TEIXEIRA, Marcos A. L. On the Diversity of Phyllodocida (Annelida: Errantia), with a Focus on Glyceridae, Goniadidae, Nephtyidae, Polynoidae, Sphaerodoridae, Syllidae, and the Holoplanktonic Families. In DIVERSITY-BASEL. MAR 2021, vol. 13, no. 3. Available at: https://doi.org/10.3390/d13030131., Registrované v: WOS
:[1.1] BOWERS, Holly A. - POCHON, Xavier - VON AMMON, Ulla - GEMMELL, Neil - STANTON, Jo-Ann L. - JEUNEN, Gert-Jan - SHERMAN, Craig D. H. - ZAIKO, Anastasija. Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance. In WATER. APR 2021, vol. 13, no. 8. Available at: https://doi.org/10.3390/w13081113., Registrované v: WOS
:[1.1] AYLAGAS, Eva - ATALAH, Javier - SANCHEZ-JEREZ, Pablo - PEARMAN, John K. - CASADO, Nuria - ASENSI, Jorge - TOLEDO-GUEDES, Kilian - CARVALHO, Susana. A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, AUG 2021, vol. 21, no. 6, p. 1889-1903. Available at: https://doi.org/10.1111/1755-0998.13395., Registrované v: WOS
:[1.1] NUNES, M. - LEMLEY, D. A. - MATCHER, G. F. - ADAMS, J. B. The influence of estuary eutrophication on the benthic diatom community: a molecular approach. In AFRICAN JOURNAL OF MARINE SCIENCE. ISSN 1814-232X, APR 3 2021, vol. 43, no. 2, p. 171-186. Available at: https://doi.org/10.2989/1814232X.2021.1897039., Registrované v: WOS
:[1.1] LIN, Xiao-Long - JIANG, Kun - LIU, Wen-Bin - LIU, Wei - BU, Wen-Jun - WANG, Xin-Hua - MO, Lidong. Toward a global DNA barcode reference library of the intolerant nonbiting midge genus Rheocricotopus Brundin, 1956. In ECOLOGY AND EVOLUTION. ISSN 2045-7758, SEP 2021, vol. 11, no. 17, p. 12161-12172. Available at: https://doi.org/10.1002/ece3.7979., Registrované v: WOS
:[1.1] ROBINSON, C., V - BAIRD, D. J. - WRIGHT, M. T. G. - PORTER, T. M. - HARTWIG, K. - HENDRIKS, E. - MACLEAN, L. - MALLINSON, R. - MONK, W. A. - PAQUETTE, C. - HAJIBABAEI, M. Combining DNA and people power for healthy rivers: Implementing the STREAM community-based approach for global freshwater monitoring. In PERSPECTIVES IN ECOLOGY AND CONSERVATION. ISSN 2530-0644, JUL-SEP 2021, vol. 19, no. 3, p. 279-285. Available at: https://doi.org/10.1016/j.pecon.2021.03.001., Registrované v: WOS
:[1.1] CREEDY, Thomas J. - ANDUJAR, Carmelo - MERAMVELIOTAKIS, Emmanouil - NOGUERALES, Victor - OVERCAST, Isaac - PAPADOPOULOU, Anna - MORLON, Helene - VOGLER, Alfried P. - EMERSON, Brent C. - ARRIBAS, Paula. Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, APR 2022, vol. 22, no. 3, p. 847-861. Available at: https://doi.org/10.1111/1755-0998.13502., Registrované v: WOS
:[1.1] JAZDZEWSKA, Anna Maria - TANDBERG, Anne Helene S. - HORTON, Tammy - BRIX, Saskia. Global gap-analysis of amphipod barcode library. In PEERJ. ISSN 2167-8359, NOV 4 2021, vol. 9. Available at: https://doi.org/10.7717/peerj.12352., Registrované v: WOS
:[1.2] TRUJILLO-GONZÁLEZ, Alejandro - VILLACORTA-RATH, Cecilia - WHITE, Nicole E. - FURLAN, Elise M. - SYKES, Mark - GROSSEL, Geoff - DIVI, Uday K. - GLEESON, Dianne. Considerations for future environmental DNA accreditation and proficiency testing schemes. In Environmental DNA, 2021-11-01, 3, 6, pp. 1049-1058. Dostupné na: https://doi.org/10.1002/edn3.243., Registrované v: SCOPUS
:[1.2] HE, Xiaoping - SUTHERLAND, Terri F. - ABBOTT, Cathryn L. Improved efficiency in eDNA metabarcoding of benthic metazoans by sieving sediments prior to DNA extraction. In Environmental DNA, 2021-07-01, 3, 4, pp. 716-726. Dostupné na: https://doi.org/10.1002/edn3.172., Registrované v: SCOPUS
:[1.2] MINAMOTO, Toshifumi - MIYA, Masaki - SADO, Tetsuya - SEINO, Satoquo - DOI, Hideyuki - KONDOH, Michio - NAKAMURA, Keigo - TAKAHARA, Teruhiko - YAMAMOTO, Satoshi - YAMANAKA, Hiroki - ARAKI, Hitoshi - IWASAKI, Wataru - KASAI, Akihide - MASUDA, Reiji - UCHII, Kimiko. An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols. In Environmental DNA, 2021-01-01, 3, 1, pp. 8-13. Dostupné na: https://doi.org/10.1002/edn3.121., Registrované v: SCOPUS
:[1.1] USANOVIC, Lejla - DESTANOVIC, Dalila - LASIC, Lejla - KURTOVIC, Jasna Hanjalic - COSTA, Filipe O. - STROIL, Belma Kalamujic. Status of the BOLD reference library of DNA barcodes of caddisflies (Insecta: Trichoptera) from the Western Balkans. In PERIODICUM BIOLOGORUM. ISSN 0031-5362, DEC 2022, vol. 124, no. 3-4, p. 107-114. Available at: https://doi.org/10.18054/pb.v124i3-4.24754., Registrované v: WOS
:[1.1] MENDOZA-RAMIREZ, Bryant H. - PAIZ-MEDINA, Lucia - SALVATIERRA-SUAREZ, Thelma - HERNANDEZ, Nelvia - HUETE-PEREZ, Jorge A. A survey of aquatic macroinvertebrates in a river from the dry corridor of Nicaragua using biological indices and DNA barcoding. In ECOLOGY AND EVOLUTION. ISSN 2045-7758, NOV 2022, vol. 12, no. 11. Available at: https://doi.org/10.1002/ece3.9487., Registrované v: WOS
:[1.1] BIKASHVILI, Ani - KACHLISHVILI, Nino - JAPOSHVILI, Bella - MUMLADZE, Levan. Species diversity and DNA barcode library of freshwater Molluscs of South Caucasus. In BIODIVERSITY DATA JOURNAL. ISSN 1314-2836, SEP 13 2022, vol. 10. Available at: https://doi.org/10.3897/BDJ.10.e84887., Registrované v: WOS
:[1.1] YAO, Meng - ZHANG, Shan - LU, Qi - CHEN, Xiaoyu - ZHANG, Si-Yu - KONG, Yueqiao - ZHAO, Jindong. Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward. In MOLECULAR ECOLOGY. ISSN 0962-1083, OCT 2022, vol. 31, no. 20, p. 5132-5164. Available at: https://doi.org/10.1111/mec.16659., Registrované v: WOS
:[1.1] CAMPOS, Camila Aida - TONIN, Alan M. - KENNARD, Mark J. - GONCALVES JUNIOR, Jose Francisco. Setting thresholds of ecosystem structure and function to protect streams of the Brazilian savanna. In FRONTIERS IN ENVIRONMENTAL SCIENCE. AUG 31 2022, vol. 10. Available at: https://doi.org/10.3389/fenvs.2022.867905., Registrované v: WOS
:[1.1] MOREIRA, Paula Dias - DUMAS, Leandro Lourenco - ROZO, Maria Paula - DESIDERIO, Gleison Robson - TAKIYA, Daniela Maeda. Integrative taxonomy supports two new species of Chimarra Stephens, 1829 from Brazil (Trichoptera: Philopotamidae). In ARTHROPOD SYSTEMATICS & PHYLOGENY. ISSN 1863-7221, MAY 30 2022, vol. 80, p. 169-185. Available at: https://doi.org/10.3897/asp.80.e76559., Registrované v: WOS
:[1.1] CARVALHO, Daniel Cardoso. Ichthyoplankton DNA metabarcoding: Challenges and perspectives. In MOLECULAR ECOLOGY. ISSN 0962-1083, MAR 2022, vol. 31, no. 6, p. 1612-1614. Available at: https://doi.org/10.1111/mec.16387., Registrované v: WOS
:[1.1] XIONG, Fan - SHU, Lu - ZENG, Honghui - GAN, Xiaoni - HE, Shunping - PENG, Zuogang. Methodology for fish biodiversity monitoring with environmental DNA metabarcoding: The primers, databases and bioinformatic pipelines. In WATER BIOLOGY AND SECURITY. FEB 2022, vol. 1, no. 1. Available at: https://doi.org/10.1016/j.watbs.2022.100007., Registrované v: WOS
:[1.1] SACCO, Mattia - GUZIK, Michelle T. - VAN DER HEYDE, Mieke - NEVILL, Paul - COOPER, Steven J. B. - AUSTIN, Andrew D. - COATES, Peterson J. - ALLENTOFT, Morten E. - WHITE, Nicole E. eDNA in subterranean ecosystems: Applications, technical aspects, and future prospects. In SCIENCE OF THE TOTAL ENVIRONMENT. ISSN 0048-9697, MAY 10 2022, vol. 820. Available at: https://doi.org/10.1016/j.scitotenv.2022.153223., Registrované v: WOS
:[1.2] WAN, Linglin - CHEN, Zhifan - GUO, Jia - TONG, Lihui - REN, Lijuan - HAN, Boping - WU, Qinglong. Principle and application of co-occurrence networks for freshwater ecosystem assessment. In Hupo Kexue/Journal of Lake Sciences, 2022-11-06, 34, 6, pp. 1765-1787. ISSN 10035427. Dostupné na: https://doi.org/10.18307/2022.0601., Registrované v: SCOPUS
:[1.1] SICKEL, Wiebke - ZIZKA, Vera - SCHERGES, Alice - BOURLAT, Sarah J. - DIEKER, Petra. Abundance estimation with DNA metabarcoding - recent advancements for terrestrial arthropods. In METABARCODING AND METAGENOMICS. NOV 23 2023, vol. 7, p. 305-337. Dostupné na: https://doi.org/10.3897/mbmg.7.112290., Registrované v: WOS
:[1.1] MASHAPHU, Mahlatse - O'BRIEN, Gordon - DOWNS, Colleen - WILLOWS-MUNRO, Sandi. The status of COI and 12S rRNA DNA barcode reference libraries for freshwater fish in South Africa: Implications for future eDNA projects. In AFRICAN ZOOLOGY. ISSN 1562-7020, DEC 15 2023, vol. 58, no. 3-4, p. 97-105. Dostupné na: https://doi.org/10.1080/15627020.2023.2274334., Registrované v: WOS
:[1.1] BUNHOLI, Ingrid V. - FOSTER, Nicole R. - CASEY, Jordan M. Environmental DNA and RNA in aquatic community ecology: Toward methodological standardization. In ENVIRONMENTAL DNA. ISSN 2637-4943, NOV 2023, vol. 5, no. 6, p. 1133-1147. Dostupné na: https://doi.org/10.1002/edn3.476., Registrované v: WOS
:[1.1] POMPEU, Paulo Santos - WOUTERS, Lidia - HILARIO, Heron Oliveira - LOURES, Raquel Coelho - PERESSIN, Alexandre - PRADO, Ivo Gaviao - SUZUKI, Fabio Mineo - CARVALHO, Daniel Cardoso. Inadequate Sampling Frequency and Imprecise Taxonomic Identification Mask Results in Studies of Migratory Freshwater Fish Ichthyoplankton. In FISHES. OCT 2023, vol. 8, no. 10. Dostupné na: https://doi.org/10.3390/fishes8100518., Registrované v: WOS
:[1.1] BORREGO-RAMOS, Maria - RIMET, Frederic - BECARES, Eloy - BLANCO, Sail. Environmental drivers of genetic variability in common diatom genera: Implications for shallow lake biomonitoring. In ECOLOGICAL INDICATORS. ISSN 1470-160X, OCT 2023, vol. 154. Dostupné na: https://doi.org/10.1016/j.ecolind.2023.110898., Registrované v: WOS
:[1.1] MACHUCA-SEPULVEDA, Jorge - MIRANDA, Javiera - LEFIN, Nicolas - PEDROSO, Alejandro - BELTRAN, Jorge F. - FARIAS, Jorge G. Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring. In BIOLOGY-BASEL. JUL 2023, vol. 12, no. 7. Dostupné na: https://doi.org/10.3390/biology12070923., Registrované v: WOS
:[1.1] MERTEN CRUZ, Marcelo - SAUVAGE, Thomas - CHARITON, Anthony - DE FREITAS, Thales Renato Ochotorena. The challenge of implementing environmental DNA metabarcoding to detect elasmobranchs in a resource-limited marine protected area. In JOURNAL OF FISH BIOLOGY. ISSN 0022-1112, JUL 2023, vol. 103, no. 1, p. 172-178. Dostupné na: https://doi.org/10.1111/jfb.15406., Registrované v: WOS
:[1.1] BUSH, A. - COMPSON, Z. - RIDEOUT, N. K. - LEVENSTEIN, B. - KATTILAKOSKI, M. - HAJIBABAEI, M. - MONK, W. A. - WRIGHT, M. T. G. - BAIRD, D. J. Replicate DNA metabarcoding can discriminate seasonal and spatial abundance shifts in river macroinvertebrate assemblages. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, AUG 2023, vol. 23, no. 6, p. 1275-1287. Dostupné na: https://doi.org/10.1111/1755-0998.13794., Registrované v: WOS
:[1.1] BERNOS, Thais A. - YATES, Matthew C. - DOCKER, Margaret F. - FITZGERALD, Amy - HANNER, Robert - HEATH, Daniel - IMRIT, Arshad - LIVERNOIS, John - MYLER, Erika - PATEL, Keta - SHARMA, Sapna - YOUNG, Robert - MANDRAK, Nicholas E. Environmental DNA (eDNA) applications in freshwater fisheries management and conservation in Canada: overview of current challenges and opportunities. In CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. ISSN 0706-652X, JUL 2023, vol. 80, no. 7, p. 1170-1186. Dostupné na: https://doi.org/10.1139/cjfas-2022-0162., Registrované v: WOS
:[1.1] GENDRE, Heloise - BEN CHEIKH, Yosra - LE FOLL, Frank - GEFFARD, Alain - LADEIRO, Melissa Palos. Comparative immune responses of blue mussel and zebra mussel haemocytes to simultaneous chemical and bacterial exposure. In FISH & SHELLFISH IMMUNOLOGY. ISSN 1050-4648, APR 2023, vol. 135. Dostupné na: https://doi.org/10.1016/j.fsi.2023.108654., Registrované v: WOS
:[3.2] YANG HAILE - ZHANG HUI - DU HAO. A framework for standardizing the processes of eDNA monitoring and an accessible vision of the future. In Hupo Kexue. ISSN 1003-5427, JAN 6 2023, vol. 35, no. 1, p. 12-31. Dostupné na: https://doi.org/10.18307/2023.0100., Registrované v: BIOSIS
:[3.2] SHEN, Elaine W. The Social and Ecological Dimensions of Coral Reef Biomonitoring. Dissertation/Thesis. University of Rhode Island, Biological and Environmental Sciences, Rhode Island, United States, 2023. ISBN 9798379502522., Registrované v: ProQuest
:[1.2] SCHENEKAR, Tamara. The current state of eDNA research in freshwater ecosystems: are we shifting from the developmental phase to standard application in biomonitoring? In Hydrobiologia, 2023-03-01, 850, 6, pp. 1263-1282. ISSN 00188158. Dostupné na: https://doi.org/10.1007/s10750-022-04891-z., Registrované v: SCOPUS
:[1.2] KUEHNE, Lauren M. - DICKENS, Chris - TICKNER, David - MESSAGER, Mathis L. - OLDEN, Julian D. - BRIEN, Gordon O. - LEHNER, Bernhard - ERIYAGAMA, Nishadi. The future of global river health monitoring. In PLOS Water, 2023-09-13, 2, 9 September, pp. Dostupné na: https://doi.org/10.1371/journal.pwat.0000101., Registrované v: SCOPUS
LEESE, Florian** - BOUCHEZ, Agnès - ABARENKOV, Kessy - ALTERMATT, Florian - BORJA, Ángel - BRUCE, Kat - EKREM, Torbjørn - ČIAMPOR, Fedor, Jr - ČIAMPOROVÁ-ZAŤOVIČOVÁ, Zuzana - COSTA, Filipe O. - DUARTE, Sofia - ELBRECHT, Vasco - FONTANETO, Diego - FRANC, Alain - GEIGER, Matthias F. - HERING, Daniel - KAHLERT, Maria - KALAMUJIĆ STROIL, Belma - KELLY, Martyn G. - KESKIN, Emre - LISKA, Igor - MERGEN, Patricia - MEISSNER, Kristian - PAWLOWSKI, Jan - PENEV, Lyubomir - REYJOL, Yorick - ROTTER, Ana - STEINKE, Dirk - WAL, Bas van der - VITECEK, Simon - ZIMMERMANN, Jonas - WEIGAND, Alexander M. Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action. In Advances in Ecological Research, 2018, vol. 58, p. 63-99. ISSN 0065-2504. Available on: https://doi.org/10.1016/bs.aecr.2018.01.001
:Ohlasy:
:[1.1] DUMBRELL, Alex J. - WOODWARD, Guy - JACKSON, Michelle C. - BOHAN, David A. ADVANCES IN ECOLOGICAL RESEARCH PREFACE. In NEXT GENERATION BIOMONITORING, PT 2. ISSN 0065-2504, 2018, vol. 59, 2, p. XIII-XVI., Registrované v: WOS
:[1.1] HAJIBABAEI, Mehrdad - PORTER, Teresita M. - WRIGHT, Michael - RUDAR, Josip. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. In PLOS ONE. ISSN 1932-6203, SEP 12 2019, vol. 14, no. 9., Registrované v: WOS
:[1.1] FERNANDES, Kristen - VAN DER HEYDE, Mieke - COGHLAN, Megan - WARDELL-JOHNSON, Grant - BUNCE, Michael - HARRIS, Richard - NEVILL, Paul. Invertebrate DNA metabarcoding reveals changes in communities across mine site restoration chronosequences. In RESTORATION ECOLOGY. ISSN 1061-2971, SEP 2019, vol. 27, no. 5, p. 1177-1186., Registrované v: WOS
:[1.1] BAGLEY, Mark - PILGRIM, Erik - KNAPP, Martin - YODER, Chris - DOMINGO, Jorge Santo - BANERJI, Aabir. High-throughput environmental DNA analysis informs a biological assessment of an urban stream. In ECOLOGICAL INDICATORS. ISSN 1470-160X, SEP 2019, vol. 104, p. 378-389., Registrované v: WOS
:[1.1] BELLE, Christina C. - STOECKLE, Bernhard C. - GEIST, Juergen. Taxonomic and geographical representation of freshwater environmental DNA research in aquatic conservation. In AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS. ISSN 1052-7613, NOV 2019, vol. 29, no. 11, p. 1996-2009., Registrované v: WOS
:[1.1] KOWALSKA, Zuzanna - PNIEWSKI, Filip - LATALA, Adam. DNA barcoding - A new device in phycologist's toolbox. In ECOHYDROLOGY & HYDROBIOLOGY. ISSN 1642-3593, JUL 2019, vol. 19, no. 3, p. 417-427., Registrované v: WOS
:[1.1] BARSOUM, N. - BRUCE, C. - FORSTER, J. - JI, Y.Q. - YU, D.W. The devil is in the detail: Metabarcoding of arthropods provides a sensitive measure of biodiversity response to forest stand composition compared with surrogate measures of biodiversity. In ECOLOGICAL INDICATORS. ISSN 1470-160X, JUN 2019, vol. 101, p. 313-323., Registrované v: WOS
:[1.2] COMPSON, Zacchaeus G. - MONK, Wendy A. - HAYDEN, Brian - BUSH, Alex - O'MALLEY, Zoë - HAJIBABAEI, Mehrdad - PORTER, Teresita M. - WRIGHT, Michael T.G. - BAKER, Christopher J.O. - AL MANIR, Mohammad Sadnan - CURRY, R. Allen - BAIRD, Donald J. Network-Based Biomonitoring: Exploring Freshwater Food Webs With Stable Isotope Analysis and DNA Metabarcoding. In Frontiers in Ecology and Evolution, 2019, vol. 7, art. no. 395, Registrované v: SCOPUS
:[1.2] BUSH, Alex - COMPSON, Zacchaeus G. - MONK, Wendy A. - PORTER, Teresita M. - STEEVES, Royce - EMILSON, Erik - GAGNE, Nellie - HAJIBABAEI, Mehrdad - ROY, Mélanie - BAIRD, Donald J. Studying Ecosystems With DNA Metabarcoding: Lessons From Biomonitoring of Aquatic Macroinvertebrates. In Frontiers in Ecology and Evolution, 2019, vol. 7, art. no. 434, Registrované v: SCOPUS
:[3.1] FERNÁNDEZ, S., RODRÍGUEZ‐MARTÍNEZ, S., GARCIA‐VAZQUEZ, E. & ARDURA, A. How can eDNA contribute in riverine macroinvertebrate assessment? A metabarcoding approach in the Nalón River (Asturias, Northern Spain). In Environmental DNA, 2019, vol. 1, p. 385-401. ISSN 2637-4943.
:[1.1] LIU, M.X. - CLARKE, L.J. - BAKER, S.C. - JORDAN, G.J. - BURRIDGE, C.P. A practical guide to DNA metabarcoding for entomological ecologists. In ECOLOGICAL ENTOMOLOGY. ISSN 0307-6946, JUN 2020, vol. 45, no. 3, p. 373-385., Registrované v: WOS
:[1.1] BUSH, A. - MONK, W.A. - COMPSON, Z.G. - PETERS, D.L. - PORTER, T.M. - SHOKRALLA, S. - WRIGHT, M.T.G. - HAJIBABAEI, M. - BAIRD, D.J. DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness. In PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. ISSN 0027-8424, APR 14 2020, vol. 117, no. 15, p. 8539-8545., Registrované v: WOS
:[1.1] PICOT, A. - COBO-DIAZ, J.F. - PAWTOWSKI, A. - DONOT, C. - LEGRAND, F. - LE FLOCH, G. - DENIEL, F. Water Microbiota in Greenhouses With Soilless Cultures of Tomato by Metabarcoding and Culture-Dependent Approaches. In FRONTIERS IN MICROBIOLOGY. JUN 23 2020, vol. 11., Registrované v: WOS
:[1.1] GRAPCI-KOTORI, L. - VAVALIDIS, T. - ZOGARIS, D. - SANDA, R. - VUKIC, J. - GECI, D. - IBRAHIMI, H. - BILALLI, A. - ZOGARIS, S. Fish distribution patterns in the White Drin (Drini i Bardhe) river, Kosovo. In KNOWLEDGE AND MANAGEMENT OF AQUATIC ECOSYSTEMS. ISSN 1961-9502, JUL 9 2020, no. 421., Registrované v: WOS
:[1.1] SEPULVEDA, A.J. - NELSON, N.M. - JERDE, C.L. - LUIKART, G. Are Environmental DNA Methods Ready for Aquatic Invasive Species Management?. In TRENDS IN ECOLOGY & EVOLUTION. ISSN 0169-5347, AUG 2020, vol. 35, no. 8, p. 668-678., Registrované v: WOS
:[1.1] MIYA, M. - GOTOH, R.O. - SADO, T. MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples. In FISHERIES SCIENCE. ISSN 0919-9268, NOV 2020, vol. 86, no. 6, p. 939-970., Registrované v: WOS
:[1.1] JIANG, K.W. - ZHANG, R. - ZHANG, Z.F. - PAN, B. - TIAN, B. DNA barcoding and molecular phylogeny of Dumasia (Fabaceae: Phaseoleae) reveals a cryptic lineage. In PLANT DIVERSITY. ISSN 2096-2703, OCT 2020, vol. 42, no. 5, p. 376-385., Registrované v: WOS
:[1.1] ANTICH, A. - PALACIN, C. - CEBRIAN, E. - GOLO, R. - WANGENSTEEN, O.S. - TURON, X. Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?. In MOLECULAR ECOLOGY. ISSN 0962-1083, JUL 2021, vol. 30, no. 13, SI, p. 3175-3188., Registrované v: WOS
:[1.1] COMPSON, Z.G. - MCCLENAGHAN, B. - SINGER, G.A.C. - FAHNER, N.A. - HAJIBABAEI, M. Metabarcoding From Microbes to Mammals: Comprehensive Bioassessment on a Global Scale. In FRONTIERS IN ECOLOGY AND EVOLUTION. ISSN 2296-701X, NOV 30 2020, vol. 8., Registrované v: WOS
:[1.2] UCHIDA, Noriko - KUBOTA, Kengo - AITA, Shunsuke - KAZAMA, So. Time-series transition of the community structure of aquatic insects at middle domain of Natori river basin in Miyagi Prefecture as revealed by eDNA metabarcoding analysis. In Ecology and Civil Engineering. ISSN 13443755, 2020-09-28, 23, 1, pp. 21-36. Dostupné na: https://doi.org/10.3825/ECE.23.21., Registrované v: SCOPUS
:[1.2] WANG, Yurong - WEN, Jiating - ZHANG, Jianmin. Review on application of environmental DNA technology in river ecosystems. In Shuili Fadian Xuebao/Journal of Hydroelectric Engineering. ISSN 10031243, 2020-05-25, 39, 5, pp. 90-98. Dostupné na: https://doi.org/10.11660/slfdxb.20200509., Registrované v: SCOPUS
:[3.1] SCHUCH, S. - LUDWIG, H. - WESCHE, K. Erfassungsmethoden für ein Insektenmonitoring, Eine Materialsammlung. BfN-Skripten 565, Bundesamt für Naturschutz, Bonn - Bad Godesberg, 2020, 83 pp, ISBN 978-3-89624-326-3.
:[1.1] LIN, X.L. - MO, L.D. - BU, W.J. - WANG, X.H. The first comprehensive DNA barcode reference library of Chinese Tanytarsus (Diptera: Chironomidae) for environmental DNA metabarcoding. In DIVERSITY AND DISTRIBUTIONS. ISSN 1366-9516, OCT 2021, vol. 27, no. 10, SI, p. 1932-1941., Registrované v: WOS
:[1.1] MARTIN, Daniel - AGUADO, Maria Teresa - FERNANDEZ ALAMO, Maria-Ana - BRITAYEV, Temir Alanovich - BOGGEMANN, Markus - CAPA, Maria - FAULWETTER, Sarah - FUKUDA, Marcelo Veronesi - HELM, Conrad - PETTI, Monica Angelica Varella - RAVARA, Ascensao - TEIXEIRA, Marcos A. L. On the Diversity of Phyllodocida (Annelida: Errantia), with a Focus on Glyceridae, Goniadidae, Nephtyidae, Polynoidae, Sphaerodoridae, Syllidae, and the Holoplanktonic Families. In DIVERSITY-BASEL. MAR 2021, vol. 13, no. 3. Available at: https://doi.org/10.3390/d13030131., Registrované v: WOS
:[1.1] BOWERS, Holly A. - POCHON, Xavier - VON AMMON, Ulla - GEMMELL, Neil - STANTON, Jo-Ann L. - JEUNEN, Gert-Jan - SHERMAN, Craig D. H. - ZAIKO, Anastasija. Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance. In WATER. APR 2021, vol. 13, no. 8. Available at: https://doi.org/10.3390/w13081113., Registrované v: WOS
:[1.1] AYLAGAS, Eva - ATALAH, Javier - SANCHEZ-JEREZ, Pablo - PEARMAN, John K. - CASADO, Nuria - ASENSI, Jorge - TOLEDO-GUEDES, Kilian - CARVALHO, Susana. A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, AUG 2021, vol. 21, no. 6, p. 1889-1903. Available at: https://doi.org/10.1111/1755-0998.13395., Registrované v: WOS
:[1.1] NUNES, M. - LEMLEY, D. A. - MATCHER, G. F. - ADAMS, J. B. The influence of estuary eutrophication on the benthic diatom community: a molecular approach. In AFRICAN JOURNAL OF MARINE SCIENCE. ISSN 1814-232X, APR 3 2021, vol. 43, no. 2, p. 171-186. Available at: https://doi.org/10.2989/1814232X.2021.1897039., Registrované v: WOS
:[1.1] LIN, Xiao-Long - JIANG, Kun - LIU, Wen-Bin - LIU, Wei - BU, Wen-Jun - WANG, Xin-Hua - MO, Lidong. Toward a global DNA barcode reference library of the intolerant nonbiting midge genus Rheocricotopus Brundin, 1956. In ECOLOGY AND EVOLUTION. ISSN 2045-7758, SEP 2021, vol. 11, no. 17, p. 12161-12172. Available at: https://doi.org/10.1002/ece3.7979., Registrované v: WOS
:[1.1] ROBINSON, C., V - BAIRD, D. J. - WRIGHT, M. T. G. - PORTER, T. M. - HARTWIG, K. - HENDRIKS, E. - MACLEAN, L. - MALLINSON, R. - MONK, W. A. - PAQUETTE, C. - HAJIBABAEI, M. Combining DNA and people power for healthy rivers: Implementing the STREAM community-based approach for global freshwater monitoring. In PERSPECTIVES IN ECOLOGY AND CONSERVATION. ISSN 2530-0644, JUL-SEP 2021, vol. 19, no. 3, p. 279-285. Available at: https://doi.org/10.1016/j.pecon.2021.03.001., Registrované v: WOS
:[1.1] CREEDY, Thomas J. - ANDUJAR, Carmelo - MERAMVELIOTAKIS, Emmanouil - NOGUERALES, Victor - OVERCAST, Isaac - PAPADOPOULOU, Anna - MORLON, Helene - VOGLER, Alfried P. - EMERSON, Brent C. - ARRIBAS, Paula. Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, APR 2022, vol. 22, no. 3, p. 847-861. Available at: https://doi.org/10.1111/1755-0998.13502., Registrované v: WOS
:[1.1] JAZDZEWSKA, Anna Maria - TANDBERG, Anne Helene S. - HORTON, Tammy - BRIX, Saskia. Global gap-analysis of amphipod barcode library. In PEERJ. ISSN 2167-8359, NOV 4 2021, vol. 9. Available at: https://doi.org/10.7717/peerj.12352., Registrované v: WOS
:[1.2] TRUJILLO-GONZÁLEZ, Alejandro - VILLACORTA-RATH, Cecilia - WHITE, Nicole E. - FURLAN, Elise M. - SYKES, Mark - GROSSEL, Geoff - DIVI, Uday K. - GLEESON, Dianne. Considerations for future environmental DNA accreditation and proficiency testing schemes. In Environmental DNA, 2021-11-01, 3, 6, pp. 1049-1058. Dostupné na: https://doi.org/10.1002/edn3.243., Registrované v: SCOPUS
:[1.2] HE, Xiaoping - SUTHERLAND, Terri F. - ABBOTT, Cathryn L. Improved efficiency in eDNA metabarcoding of benthic metazoans by sieving sediments prior to DNA extraction. In Environmental DNA, 2021-07-01, 3, 4, pp. 716-726. Dostupné na: https://doi.org/10.1002/edn3.172., Registrované v: SCOPUS
:[1.2] MINAMOTO, Toshifumi - MIYA, Masaki - SADO, Tetsuya - SEINO, Satoquo - DOI, Hideyuki - KONDOH, Michio - NAKAMURA, Keigo - TAKAHARA, Teruhiko - YAMAMOTO, Satoshi - YAMANAKA, Hiroki - ARAKI, Hitoshi - IWASAKI, Wataru - KASAI, Akihide - MASUDA, Reiji - UCHII, Kimiko. An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols. In Environmental DNA, 2021-01-01, 3, 1, pp. 8-13. Dostupné na: https://doi.org/10.1002/edn3.121., Registrované v: SCOPUS
:[1.1] USANOVIC, Lejla - DESTANOVIC, Dalila - LASIC, Lejla - KURTOVIC, Jasna Hanjalic - COSTA, Filipe O. - STROIL, Belma Kalamujic. Status of the BOLD reference library of DNA barcodes of caddisflies (Insecta: Trichoptera) from the Western Balkans. In PERIODICUM BIOLOGORUM. ISSN 0031-5362, DEC 2022, vol. 124, no. 3-4, p. 107-114. Available at: https://doi.org/10.18054/pb.v124i3-4.24754., Registrované v: WOS
:[1.1] MENDOZA-RAMIREZ, Bryant H. - PAIZ-MEDINA, Lucia - SALVATIERRA-SUAREZ, Thelma - HERNANDEZ, Nelvia - HUETE-PEREZ, Jorge A. A survey of aquatic macroinvertebrates in a river from the dry corridor of Nicaragua using biological indices and DNA barcoding. In ECOLOGY AND EVOLUTION. ISSN 2045-7758, NOV 2022, vol. 12, no. 11. Available at: https://doi.org/10.1002/ece3.9487., Registrované v: WOS
:[1.1] BIKASHVILI, Ani - KACHLISHVILI, Nino - JAPOSHVILI, Bella - MUMLADZE, Levan. Species diversity and DNA barcode library of freshwater Molluscs of South Caucasus. In BIODIVERSITY DATA JOURNAL. ISSN 1314-2836, SEP 13 2022, vol. 10. Available at: https://doi.org/10.3897/BDJ.10.e84887., Registrované v: WOS
:[1.1] YAO, Meng - ZHANG, Shan - LU, Qi - CHEN, Xiaoyu - ZHANG, Si-Yu - KONG, Yueqiao - ZHAO, Jindong. Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward. In MOLECULAR ECOLOGY. ISSN 0962-1083, OCT 2022, vol. 31, no. 20, p. 5132-5164. Available at: https://doi.org/10.1111/mec.16659., Registrované v: WOS
:[1.1] CAMPOS, Camila Aida - TONIN, Alan M. - KENNARD, Mark J. - GONCALVES JUNIOR, Jose Francisco. Setting thresholds of ecosystem structure and function to protect streams of the Brazilian savanna. In FRONTIERS IN ENVIRONMENTAL SCIENCE. AUG 31 2022, vol. 10. Available at: https://doi.org/10.3389/fenvs.2022.867905., Registrované v: WOS
:[1.1] MOREIRA, Paula Dias - DUMAS, Leandro Lourenco - ROZO, Maria Paula - DESIDERIO, Gleison Robson - TAKIYA, Daniela Maeda. Integrative taxonomy supports two new species of Chimarra Stephens, 1829 from Brazil (Trichoptera: Philopotamidae). In ARTHROPOD SYSTEMATICS & PHYLOGENY. ISSN 1863-7221, MAY 30 2022, vol. 80, p. 169-185. Available at: https://doi.org/10.3897/asp.80.e76559., Registrované v: WOS
:[1.1] CARVALHO, Daniel Cardoso. Ichthyoplankton DNA metabarcoding: Challenges and perspectives. In MOLECULAR ECOLOGY. ISSN 0962-1083, MAR 2022, vol. 31, no. 6, p. 1612-1614. Available at: https://doi.org/10.1111/mec.16387., Registrované v: WOS
:[1.1] XIONG, Fan - SHU, Lu - ZENG, Honghui - GAN, Xiaoni - HE, Shunping - PENG, Zuogang. Methodology for fish biodiversity monitoring with environmental DNA metabarcoding: The primers, databases and bioinformatic pipelines. In WATER BIOLOGY AND SECURITY. FEB 2022, vol. 1, no. 1. Available at: https://doi.org/10.1016/j.watbs.2022.100007., Registrované v: WOS
:[1.1] SACCO, Mattia - GUZIK, Michelle T. - VAN DER HEYDE, Mieke - NEVILL, Paul - COOPER, Steven J. B. - AUSTIN, Andrew D. - COATES, Peterson J. - ALLENTOFT, Morten E. - WHITE, Nicole E. eDNA in subterranean ecosystems: Applications, technical aspects, and future prospects. In SCIENCE OF THE TOTAL ENVIRONMENT. ISSN 0048-9697, MAY 10 2022, vol. 820. Available at: https://doi.org/10.1016/j.scitotenv.2022.153223., Registrované v: WOS
:[1.2] WAN, Linglin - CHEN, Zhifan - GUO, Jia - TONG, Lihui - REN, Lijuan - HAN, Boping - WU, Qinglong. Principle and application of co-occurrence networks for freshwater ecosystem assessment. In Hupo Kexue/Journal of Lake Sciences, 2022-11-06, 34, 6, pp. 1765-1787. ISSN 10035427. Dostupné na: https://doi.org/10.18307/2022.0601., Registrované v: SCOPUS
:[1.1] SICKEL, Wiebke - ZIZKA, Vera - SCHERGES, Alice - BOURLAT, Sarah J. - DIEKER, Petra. Abundance estimation with DNA metabarcoding - recent advancements for terrestrial arthropods. In METABARCODING AND METAGENOMICS. NOV 23 2023, vol. 7, p. 305-337. Dostupné na: https://doi.org/10.3897/mbmg.7.112290., Registrované v: WOS
:[1.1] MASHAPHU, Mahlatse - O'BRIEN, Gordon - DOWNS, Colleen - WILLOWS-MUNRO, Sandi. The status of COI and 12S rRNA DNA barcode reference libraries for freshwater fish in South Africa: Implications for future eDNA projects. In AFRICAN ZOOLOGY. ISSN 1562-7020, DEC 15 2023, vol. 58, no. 3-4, p. 97-105. Dostupné na: https://doi.org/10.1080/15627020.2023.2274334., Registrované v: WOS
:[1.1] BUNHOLI, Ingrid V. - FOSTER, Nicole R. - CASEY, Jordan M. Environmental DNA and RNA in aquatic community ecology: Toward methodological standardization. In ENVIRONMENTAL DNA. ISSN 2637-4943, NOV 2023, vol. 5, no. 6, p. 1133-1147. Dostupné na: https://doi.org/10.1002/edn3.476., Registrované v: WOS
:[1.1] POMPEU, Paulo Santos - WOUTERS, Lidia - HILARIO, Heron Oliveira - LOURES, Raquel Coelho - PERESSIN, Alexandre - PRADO, Ivo Gaviao - SUZUKI, Fabio Mineo - CARVALHO, Daniel Cardoso. Inadequate Sampling Frequency and Imprecise Taxonomic Identification Mask Results in Studies of Migratory Freshwater Fish Ichthyoplankton. In FISHES. OCT 2023, vol. 8, no. 10. Dostupné na: https://doi.org/10.3390/fishes8100518., Registrované v: WOS
:[1.1] BORREGO-RAMOS, Maria - RIMET, Frederic - BECARES, Eloy - BLANCO, Sail. Environmental drivers of genetic variability in common diatom genera: Implications for shallow lake biomonitoring. In ECOLOGICAL INDICATORS. ISSN 1470-160X, OCT 2023, vol. 154. Dostupné na: https://doi.org/10.1016/j.ecolind.2023.110898., Registrované v: WOS
:[1.1] MACHUCA-SEPULVEDA, Jorge - MIRANDA, Javiera - LEFIN, Nicolas - PEDROSO, Alejandro - BELTRAN, Jorge F. - FARIAS, Jorge G. Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring. In BIOLOGY-BASEL. JUL 2023, vol. 12, no. 7. Dostupné na: https://doi.org/10.3390/biology12070923., Registrované v: WOS
:[1.1] MERTEN CRUZ, Marcelo - SAUVAGE, Thomas - CHARITON, Anthony - DE FREITAS, Thales Renato Ochotorena. The challenge of implementing environmental DNA metabarcoding to detect elasmobranchs in a resource-limited marine protected area. In JOURNAL OF FISH BIOLOGY. ISSN 0022-1112, JUL 2023, vol. 103, no. 1, p. 172-178. Dostupné na: https://doi.org/10.1111/jfb.15406., Registrované v: WOS
:[1.1] BUSH, A. - COMPSON, Z. - RIDEOUT, N. K. - LEVENSTEIN, B. - KATTILAKOSKI, M. - HAJIBABAEI, M. - MONK, W. A. - WRIGHT, M. T. G. - BAIRD, D. J. Replicate DNA metabarcoding can discriminate seasonal and spatial abundance shifts in river macroinvertebrate assemblages. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, AUG 2023, vol. 23, no. 6, p. 1275-1287. Dostupné na: https://doi.org/10.1111/1755-0998.13794., Registrované v: WOS
:[1.1] BERNOS, Thais A. - YATES, Matthew C. - DOCKER, Margaret F. - FITZGERALD, Amy - HANNER, Robert - HEATH, Daniel - IMRIT, Arshad - LIVERNOIS, John - MYLER, Erika - PATEL, Keta - SHARMA, Sapna - YOUNG, Robert - MANDRAK, Nicholas E. Environmental DNA (eDNA) applications in freshwater fisheries management and conservation in Canada: overview of current challenges and opportunities. In CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. ISSN 0706-652X, JUL 2023, vol. 80, no. 7, p. 1170-1186. Dostupné na: https://doi.org/10.1139/cjfas-2022-0162., Registrované v: WOS
:[1.1] GENDRE, Heloise - BEN CHEIKH, Yosra - LE FOLL, Frank - GEFFARD, Alain - LADEIRO, Melissa Palos. Comparative immune responses of blue mussel and zebra mussel haemocytes to simultaneous chemical and bacterial exposure. In FISH & SHELLFISH IMMUNOLOGY. ISSN 1050-4648, APR 2023, vol. 135. Dostupné na: https://doi.org/10.1016/j.fsi.2023.108654., Registrované v: WOS
:[3.2] YANG HAILE - ZHANG HUI - DU HAO. A framework for standardizing the processes of eDNA monitoring and an accessible vision of the future. In Hupo Kexue. ISSN 1003-5427, JAN 6 2023, vol. 35, no. 1, p. 12-31. Dostupné na: https://doi.org/10.18307/2023.0100., Registrované v: BIOSIS
:[3.2] SHEN, Elaine W. The Social and Ecological Dimensions of Coral Reef Biomonitoring. Dissertation/Thesis. University of Rhode Island, Biological and Environmental Sciences, Rhode Island, United States, 2023. ISBN 9798379502522., Registrované v: ProQuest
:[1.2] SCHENEKAR, Tamara. The current state of eDNA research in freshwater ecosystems: are we shifting from the developmental phase to standard application in biomonitoring? In Hydrobiologia, 2023-03-01, 850, 6, pp. 1263-1282. ISSN 00188158. Dostupné na: https://doi.org/10.1007/s10750-022-04891-z., Registrované v: SCOPUS
:[1.2] KUEHNE, Lauren M. - DICKENS, Chris - TICKNER, David - MESSAGER, Mathis L. - OLDEN, Julian D. - BRIEN, Gordon O. - LEHNER, Bernhard - ERIYAGAMA, Nishadi. The future of global river health monitoring. In PLOS Water, 2023-09-13, 2, 9 September, pp. Dostupné na: https://doi.org/10.1371/journal.pwat.0000101., Registrované v: SCOPUS

:[1.1] SHEN, Elaine W. - VANDENBERG, Jessica M. - MOORE, Amelia. Sensing inequity: technological solutionism, biodiversity conservation, and environmental DNA. In BIOSOCIETIES. ISSN 1745-8552, SEP 2024, vol. 19, no. 3, p. 501-525. Dostupné na: https://doi.org/10.1057/s41292-023-00315-w., Registrované v: WOS
:[1.1] CHOI, Yerim - HONG, Geun-Hyeok - LA, Geung-Hwan - KIM, Hyun-Woo - KIM, Moo Seong - JANG, Min-Ho - CHANG, Kwang-Hyeon - OH, Hye-Ji. Spatial Distribution of Calanoida in Freshwater Ecosystems and Their Application as a Food Web Assessment Index. In WATER. DEC 2024, vol. 16, no. 23, art. no. 3414. Dostupné na: https://doi.org/10.3390/w16233414., Registrované v: WOS
:[1.1] WESTFALL, Kristen M. - SINGER, Gregory A. C. - KAUSHAL, Muneesh - GILMORE, Scott R. - FAHNER, Nicole - HAJIBABAEI, Mehrdad - ABBOTT, Cathryn L. NAMERS: a purpose-built reference DNA sequence database to support applied eDNA metabarcoding. In METABARCODING AND METAGENOMICS. NOV 19 2024, vol. 8, p. 359-379. Dostupné na: https://doi.org/10.3897/mbmg.8.125095., Registrované v: WOS
:[1.1] VERDIER, Heloise - DATRY, Thibault - LOGEZ, Maxime - KONECNY-DUPRE, Lara - GAUTHIER, Mailys - LEFEBURE, Tristan. Environmental DNA Particle Size Distribution and Quantity Differ Across Taxa and Organelles. In ENVIRONMENTAL DNA. ISSN 2637-4943, SEP 2024, vol. 6, no. 5, art. no. e598. Dostupné na: https://doi.org/10.1002/edn3.598., Registrované v: WOS
:[1.2] GU, Si Yu - CHEN, Kai - JIN, Xiao Wei - LI, Wen Pan - CHEN, Xiao Fei - XIONG, Jing - TANG, Min Zhe - JIANG, Chuan Qi - XIONG, Jie - LI, Tao - ZHANG, Qi - CUI, Yong De - ZENG, Hong Hui - HE, Shun Ping - WANG, Ye Yao - MIAO, Wei. DEVELOPMENT, APPLICATIONS, AND STANDARDIZATION OF ENVIRONMENTAL DNA MONITORING TECHNOLOGY FOR AQUATIC ORGANISMS. In Acta Hydrobiologica Sinica, 2024-01-01, 48, 8, pp. 1443-1458. ISSN 10003207. Dostupné na: https://doi.org/10.7541/2024.2023.0409., Registrované v: SCOPUS
:[1.2] XIONG, Li - ZHAO, Xianfu - JIA, Shiqi - YIN, Kun - XU, Renji - WANG, Beixin - WANG, Yeyao - JIN, Xiaowei. Standardized quality assurance and control in aquatic biological monitoring: Dynamics and outlook in China. In Hupo Kexue Journal of Lake Sciences, 2024-01-01, 36, 4, pp. 975-986. ISSN 10035427. Dostupné na: https://doi.org/10.18307/2024.0400., Registrované v: SCOPUS
:[1.1] MURRIA, Cesc - WANGENSTEEN, Owen S. - SOMMA, Simona - VAISANEN, Leif - FORTUNO, Pau - ARNEDO, Miquel A. - PRAT, Narcis. Taxonomic accuracy and complementarity between bulk and eDNA metabarcoding provides an alternative to morphology for biological assessment of freshwater macroinvertebrates. In SCIENCE OF THE TOTAL ENVIRONMENT. ISSN 0048-9697, JUL 20 2024, vol. 935, art. no. 173243. Dostupné na: https://doi.org/10.1016/j.scitotenv.2024.173243., Registrované v: WOS
:[1.1] BIRD, Starsha - DUTTON, Paul - WILKINSON, Shaun - SMITH, Josh - DUGGAN, Ian - MCGAUGHRAN, Angela. Developing an eDNA approach for wetland biomonitoring: Insights on technical and conventional approaches. In ENVIRONMENTAL DNA. ISSN 2637-4943, MAY 2024, vol. 6, no. 3, art. no. e574. Dostupné na: https://doi.org/10.1002/edn3.574., Registrované v: WOS
:[1.1] KIM, Ha-Kyung - CHO, In-Hwan - HWANG, Eun-A - HAN, Byung-Hun - KIM, Baik-Ho. Advancing River Health Assessments: Integrating Microscopy and Molecular Techniques through Diatom Indices. In WATER. MAR 2024, vol. 16, no. 6, art. no. 853. Dostupné na: https://doi.org/10.3390/w16060853., Registrované v: WOS
:[1.1] WILKINSON, Shaun P. - GAULT, Amy A. - WELSH, Susan A. - SMITH, Joshua P. - DAVID, Bruno O. - HICKS, Andy S. - FAKE, Daniel R. - SUREN, Alastair M. - SHAFFER, Megan R. - JARMAN, Simon N. - BUNCE, Michael. TICI: a taxon-independent community index for eDNA-based ecological health assessment. In PEERJ. ISSN 2167-8359, FEB 26 2024, vol. 12, art. no. e16963. Dostupné na: https://doi.org/10.7717/peerj.16963., Registrované v: WOS
:[1.1] DYSON, Karen - NICOLAU, Andrea P. - TENNESON, Karis - FRANCESCONI, Wendy - DANIELS, Amy - ANDRICH, Giulia - CALDAS, Bernardo - CASTANO, Silvia - DE CAMPOS, Nathanael - DILGER, John - GUIDOTTI, Vinicius - JAQUES, Iara - MCCULLOUGH, Ian M. - MCDEVITT, Allan D. - MOLINA, Luis - NEKORCHUK, Dawn M. - NEWBERRY, Tom - PEREIRA, Cristiano Lima - PEREZ, Jorge - RICHARDS-DIMITRIE, Teal - RIVERA, Ovidio - RODRIGUEZ, Beatriz - SALES, Naiara - TELLO, Jhon - WESPESTAD, Crystal - ZUTTA, Brian - SAAH, David. Coupling remote sensing and eDNA to monitor environmental impact: A pilot to quantify the environmental benefits of sustainable agriculture in the Brazilian Amazon. In PLOS ONE. FEB 14 2024, vol. 19, no. 2, art. no. e0289437. Dostupné na: https://doi.org/10.1371/journal.pone.0289437., Registrované v: WOS
:[1.1] KELLY, Ryan P. - LODGE, David M. - LEE, Kai N. - THEROUX, Susanna - SEPULVEDA, Adam J. - SCHOLIN, Christopher A. - CRAINE, Joseph M. - ANDRUSZKIEWICZ ALLAN, Elizabeth - NICHOLS, Krista M. - PARSONS, Kim M. - GOODWIN, Kelly D. - GOLD, Zachary - CHAVEZ, Francisco P. - NOBLE, Rachel T. - ABBOTT, Cathryn L. - BAERWALD, Melinda R. - NAAUM, Amanda M. - THIELEN, Peter M. - SIMONS, Ariel Levi - JERDE, Christopher L. - DUDA, Jeffrey J. - HUNTER, Margaret E. - HAGAN, John A. - MEYER, Rachel Sarah - STEELE, Joshua A. - STOECKLE, Mark Y. - BIK, Holly M. - MEYER, Christopher P. - STEIN, Eric - JAMES, Karen E. - THOMAS, Austen C. - DEMIR-HILTON, Elif - TIMMERS, Molly A. - GRIFFITH, John F. - WEISE, Michael J. - WEISBERG, Stephen B. Toward a national eDNA strategy for the United States. In ENVIRONMENTAL DNA. ISSN 2637-4943, JAN 2024, vol. 6, no. 1, art. no. e432. Dostupné na: https://doi.org/10.1002/edn3.432., Registrované v: WOS
:[3.2] BRAVO ORTIZ, Viviana Paola. Evaluation of Aquatic Macroinvertebrates Communities Comparing Molecular and Morphological Identification Tools in Streams. University of Georgia, Conservation Ecology and Sustainable Development - MS, Georgia, United States, 2024. ISBN 9798382795102, Registrované v: ProQuest
:[1.1] MACHUCA-SEPúLVEDA, J. - LóPEZ, M. - FIERRO, P. - BELTRáN, J.F. - NORAMBUENA, J.A. - OLIVEIRA, R.P.S. - ZAMORANO, M. - FARIAS, J.G. Ecological responses of freshwater macroinvertebrates to augmented drought: A literature review and projections. In ECOLOGICAL INDICATORS. ISSN 1470-160X, JUL 2024, vol. 164, art. no. 112153. Dostupné na: https://doi.org/10.1016/j.ecolind.2024.112153., Registrované v: WOS